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Tonight I board the big silver bird with Lara to head to Darwin to finalise the purchase of our apartment. In the past fortnight, said co-owner has been in Melbourne, courtesy of the Territory's requirement that everything be done with pen-and-paper. The first step was getting the final signatories on the bank loan, which took three attempts as the bank made minor errors each time, which was mildly annoying. Now we head the great tropical north to get the keys and move in. In the meantime, it has meant that my dear rodent animal companions, Mayhem and Mayday, also need to have a little holiday. They have grown up so much in just a couple of months! As Mel offered, she is now the keeper of the little rascals for the coming week, where they are safely ensconced in her shower cubicle and seem to be thoroughly enjoying their temporary residence.

In work news, for the past two days, I have been buried in delivering two HPC and Bioinformatics workshops with some 64 attendees. These are similar to the standard workshops I deliver but modified to take into account the numerous applications and workflows, e.g., "Rattus Norvegicus ESTs with BLAST and Slurm". Part of the workshops includes tests which I worked with the University of Agricultural Sciences in Sweden and a workflow from Data Carpentry, modified for HPC systems, that use a long-term evolution experiment published in 2016 ("Tempo and mode of genome evolution in a 50,000-generation experiment"). The workshops will also feature in a presentation on HPC for Bioinformatics that I'm planning to give to eResearch New Zealand early next year.

As usual, my social life has been pretty full as well. In an effort to have some sort of narrative thread in this entry, I will mention an outing with Erica to the Sun Theatre in Yarraville to see the satirical speculative fiction film "The Substance" which has an excellent and comprehensive review from my old friend Andrew M, who accurately notes: ".. from a filmmaking point of view, it’s an incredibly well put together, intricately constructed, horrifically grotesque and sickening movie. There are incredible scenes, immaculate shots piled on top of each other, with no concern, with no regard for our well being whatsoever". It has thematic depth with its portrayal of the patriarchial beauty industry, its competition between generations, birthing metaphors, and whilst draws upon the body-horror of John Carpenter's "The Thing", David Cronenberg's "Videodrome", and with an over-the-top comic ending in the style of Peter Jackson's "Braindead". It is utterly grotesque and I loved it; and I certainly understand why others don't.
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For the past few days I've been almost entirely buried in the last pieces of assessment for "The Physical Basis of Climate Change" and "Environmental Law", which wraps up trimester one of my MCCSAP degree. In the end, I am quite happy with what I submitted for both, although in the latter I did veer in the direction of critical legal studies. The more I studied the re-interpretations of Aotearoa New Zealand's ill-fated Resource Management Act as new legislation comes in after thirty years, I could only conclude with the Maori Whakataukī (proverb): "Kia whakatōmuri te haere whakamua" ("I walk backwards into the future with my eyes fixed on my past"). As for the former, the grim and factual reality of stubborn physics and the relentless and tragic march of mathematic projection leads me to echo the words of Kate Marvel; "As a climate scientist, I am often asked to talk about hope. .. Climate change is bleak, the organizers always say. Tell us a happy story. Give us hope. The problem is, I don't have any... But the opposite of hope is not despair. It is grief... We need courage, not hope."

At the end of last week I also ran two days of Linux and HPC workshops for a range of bioinformaticians mostly from the veterinary and agricultural Sciences, but quite a few from health sciences and the attached medical centres as well. They were a good lot, with some excellent questions, and it pleased me a great deal that I was able to work my usual content to fit more precisely to the software that they use, including the several steps of a genomics workflow including sequencing data, quality control, alignment, and variant calling with everyone's favourite E. Coli. The process led me to discover a couple of applications that we didn't have installed, specifically the FASTX-toolki and Seqtk, both of which can be slotted into my regular expressions workshop.

The weekend also witnessed being host to the visit of one James H., with whom I share interests in roleplaying games and indigenous affairs, both fields in which I consider him to be more expert than I. Through James and Alison B I was taken to the 50th birthday of Caitlin H, which had a "Doctor" theme on account of the number of people present who had both PhDs or were science fiction fans; there were quite a few attired in a Dr Who style, for example. It was quite a delightful evening with some 50 people crowded into the Understudy of the stylish Bar 1806. For my own part, I went as the son of Dr. Merkwurkdigliebe, who some would know as "Doctor Strangelove", and I continued his message, albeit with a climate disaster approach. The following day James hosted an RPG session with the Futurama-like Farflung, which generated a story that was dramatic, hilarious, and wild. Plus it cleverly used the six quarks (up, down, strange, charmed, top, bottom) as attributes. I will be giving that another look in the future. For now - a moment's break! I think I deserve it.
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In a hat-tip to the previous journal entry (which referred to SF adventures), there is a certain degree of similarity in this one. The weekend, apparently, is similar to the week prior which explains why I feel that I haven't had a weekend yet. Today however I was teaching mainly immunological doctoral researchers at the Peter Doherty Institute. I was planning to do an Introduction to Linux and HPC but after listening to their explanations of existing genomics workflows, I switched my presentation immediately to my Bioinformatics for HPC course which combines the general courses with the Date Carpentry course on genomics (so yes, two courses squeezed into one), with most of the first part being completed. They were a pretty switched-on group, with a number having good levels of previous experience, and with some challenging and insightful questions.

Out-of-hours what spare time I have has been largely spent on working on an assignment for my final course for my MSc in Information Systems, with the dissertation to follow. With a few stuff-ups in my residency enrolment, I am now booked to go to Zurich in November. After missing winter for two years in succession, it will be a pleasant change to get two in a single year, although I imagine it will be quite a shock to the system returning from the onset of a European winter to the beginning of an Australian summer. Still, the practical upshot of all this will be the completion of degree number five, and with six and seven in the wings as well. It will, of course, be another opportunity to visit Europe which will require mapping out something will include visits to friends and family as well as trying to expand the scope of places to include new areas.

On the weekend played a session of the new edition of RuneQuest, having wrapped up our third edition game that made use of various "gateway" settings (Questworld, Griffin Island, Elderaad). This is set in the deep, weird, and mostly consistent fantasy world of Glorantha which in some many ways has a mythic structure that is stronger than most real-world religions, but that's what you get for a fantasy world designed by a practicing shaman and mythologist. For my own part, I took the role of the most comic species in the setting, the duck-like durulz (and with an appropriate pun, named her Rowena Wigeon, a trickster cult member). The curious thing about these beings is that even though they come across initially as quite ridiculous (image of Donald Duck come to mind), they have an extraordinary depth of character. Cursed, flightless, they live in a swampland inhabited by a demi-god vampire and his minions. As a result, they may seem initially to be ridiculous, but they carry with themselves a level of surly seriousness and are savagely foul-beaked as a result. Strange, deep, but consistent? That's Glorantha for you and that is why in the past I have described it as the greatest fantasy world ever created.

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