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2024-11-23 05:38 pm
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Territory Apartment Update, HPC Bioinformatics, and The Substance

Tonight I board the big silver bird with Lara to head to Darwin to finalise the purchase of our apartment. In the past fortnight, said co-owner has been in Melbourne, courtesy of the Territory's requirement that everything be done with pen-and-paper. The first step was getting the final signatories on the bank loan, which took three attempts as the bank made minor errors each time, which was mildly annoying. Now we head the great tropical north to get the keys and move in. In the meantime, it has meant that my dear rodent animal companions, Mayhem and Mayday, also need to have a little holiday. They have grown up so much in just a couple of months! As Mel offered, she is now the keeper of the little rascals for the coming week, where they are safely ensconced in her shower cubicle and seem to be thoroughly enjoying their temporary residence.

In work news, for the past two days, I have been buried in delivering two HPC and Bioinformatics workshops with some 64 attendees. These are similar to the standard workshops I deliver but modified to take into account the numerous applications and workflows, e.g., "Rattus Norvegicus ESTs with BLAST and Slurm". Part of the workshops includes tests which I worked with the University of Agricultural Sciences in Sweden and a workflow from Data Carpentry, modified for HPC systems, that use a long-term evolution experiment published in 2016 ("Tempo and mode of genome evolution in a 50,000-generation experiment"). The workshops will also feature in a presentation on HPC for Bioinformatics that I'm planning to give to eResearch New Zealand early next year.

As usual, my social life has been pretty full as well. In an effort to have some sort of narrative thread in this entry, I will mention an outing with Erica to the Sun Theatre in Yarraville to see the satirical speculative fiction film "The Substance" which has an excellent and comprehensive review from my old friend Andrew M, who accurately notes: ".. from a filmmaking point of view, it’s an incredibly well put together, intricately constructed, horrifically grotesque and sickening movie. There are incredible scenes, immaculate shots piled on top of each other, with no concern, with no regard for our well being whatsoever". It has thematic depth with its portrayal of the patriarchial beauty industry, its competition between generations, birthing metaphors, and whilst draws upon the body-horror of John Carpenter's "The Thing", David Cronenberg's "Videodrome", and with an over-the-top comic ending in the style of Peter Jackson's "Braindead". It is utterly grotesque and I loved it; and I certainly understand why others don't.
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2024-09-22 10:33 am
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Apartment Purchased!

Late last week my dear friend Lara and I purchased an apartment in Darwin. Or, to be more accurate, we paid the deposit, signed the contract and will be receiving a bank loan. It's large, modern, and centrally located, with wonderful views over the Fisherman's Wharf and harbour to the National Park. It's very close to where Lara used to live and where somehow I helped her move in twice, despite living almost 3,800km away. To think that it was only several weeks ago that Lara was featured on the ABC news on rental issues in Darwin as she and her housemate were forced out of their apartment by a questionable real-estate agent whose management of a mould issue left a lot to be desired. Lara had future funds pending and the ability to pay, but time was of the essence. Plus, a loan application from a single person for such a place was tricky at best. My offer to help with the deposit and to put myself down on the application was graciously approved ("with complete astonishment" is probably a fair addition).

It is inevitable in such circumstances that I must sing Lara's praises. We met on a COVID-era cocktail group in 2020 where she developed a powerful drink named "The Brett Sutton". Due to both past and current work requirements, I found myself able to send the recipe to the former Victorian Chief Health Officer. When a visitation became possible, we tested the drink to some excess and determined it could probably wipe out anything (including us). But it was also a very timely meeting of minds; I was in a very dark place, going through a very tumultuous on-again, off-again relationship with a person whom Lara knew all too well, and she was able to give me great insight into how current behaviour correlated with past behaviour. Far from the only person who helped me through those days, she accepted me into her life with both sympathy and a strong sense of ethics. Importantly, this included a mutual acknowledgement of our own failings with a sense of contriteness and remorse when such failures occur. I do wish more people showed that.

Lara is an incredibly stylish woman; she carries herself like a well-dressed rogue pixie with an adorable dwarf rabbit and her beautiful red convertible. She lives with almost spartan modern furnishings, but ever-questing for the best quality culinary delights. Our politics are quite compatible (she's a green and I'm a red) with a notable lack of partisanship. We have both engaged in numerous visits to special events at galleries and museums, and we have taken interstate and international holidays together. In recent months, I have also had the opportunity to meet her family and close family friends who have accepted me into the fold. Most importantly, through our many deep and extended conversations and activities, I find myself in a position where I trust her sense of loyalty and responsibility completely. Whilst utterly requisite in financial situations like this, it also speaks volumes of her character. I am so lucky to have Lara in my life as are all who know her. I will forever recall with great fondness after our first meeting that I declared, like Captain Louis Renault and Rick Blaine, "I think this is the beginning of a beautiful friendship".
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2024-06-14 09:16 pm
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Territory Part II: Fish, Rodeo, Donkeys, Bioinformatics, Bunnies.

It is with the realisation of hindsight that the less formal events on my Darwin adventure mostly involved non-human animals in some way. As part of the ACFS proceedings, we visited the Aquascene Fish Feeding Sanctuary, where multiple fish species (mainly Diamond Scale Mullet, Milkfish, and Catfish) visit the shoreline at high-tide for hand-feeding; good fun for kids of all ages. The following night Lara, Adrian M., and I went to the Adelaide River Rodeo and for two of us it was our first rodeo. Not exactly high-brow culture, the bull-riding was what one could expect and multiple fights broke out at the end of the show. After that crowd dispersed the remaining people enjoyed a polished performance by the live band Dr. Elephant, who played a variety of (mostly) 1980s popular songs.

The following day was King's Birthday. I took the opportunity to visit the Adelaide River War Cemetery, which has the graves of over four hundred individuals from the armed forces, merchant navy, etc who lost their lives in the Timor and Northern Australian regions, including the bombing of Darwin. I visited every grave, noting that some of the fallen were as young as 17 and several were marked "Unknown"; the visceral cost of war. After this, Lara and I went to Shu Li's Donkey Sanctuary, our third attempt to visit this location. We shared a lovely lunch with a few ACFS people, met the donkeys, and finally (quite exhausted from the day's events) made our way back to Darwin town.

The following day I made my way out to visit the HPC Support officer at the Menzies School of Health Research, Mariana Barnes, whose name comes with quite a skillset in bioinformatics and research in malaria. Unsurprisingly, their system is a lot smaller and specialist than that at UniMelb but, as our lengthy conversation revealed, unsurprisingly there are similar software and user challenges. Finally, my last day in Darwin was relaxing in the company of Lara as she built a new castle for her rabbit, Cocoa, who seemed very pleased with the initial result; I suggested the name "Cocoa Cabana", which seems very appropriate. Anyway, I have now returned to Melbourne after taking the midnight flight and experiencing some amusement of the change of climate. It will take a couple of days to recover from this "holiday"!
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2023-07-26 04:24 pm
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Darwin Adventures Part II: Crocodiles, Sickness, and More

The final Darwin Fringe event that Lara and I witnessed was "I'm on prescription drugs" by Thomas Midena which explored the trope of persistent hallucinations in the style of Kafka to Dick. Sunday stepped into Part II of the Adventures with a "jumping crocodiles" ("fishing for crocodiles") on the Adelaide River on the edge of the Djukbinj National Park. Taking a fairly small and flat boat and seeing up to 5.5m saltwater crocodiles in an up-close manner was certainly worthwhile. Following this, there was a journey and overnight stay through the impressive thick savannah woodland of Litchfield National Park, with its waterfalls and pools. Something that is not heavily advertised is how the parkland includes the historic environmental disaster of Australia's first uranium mine at Rum Jungle River. My mind also wandered into consideration of what the effect of a few degrees of warming would do to the woodlands; a longer wet season with greater humidity, more tropical foliage, etc., would be likely. There is a good argument for greater care of this ecosystem.

Here's a pro tip, which most people would already be quite aware of; when taking a day's leave don't get sick. Ignoring this advice has meant that I've been pretty well laid out for the past two days with a rather frustrating head cold. I've been capable of being roughly human for a few hours a day (including checking out some local real estate), but the combination of rest and standard medications has led to what appears to be a reasonable recovery, just in time for HPC workshops tomorrow and Friday. Thus ends the Darwin adventure; it is always quite wonderful to spend some time with my dear friend Lara, who apart from having a heart of gold, is certainly one of the most glamourous women of Darwin (and her red Ford Focus convertible is one of the most glamourous cars), it was delightful to catch up with Jac and Raj, to meet quality new housemate Mia, to spend an evening with new friends such as Vick and Mon, and, of course, to see and hear the Fringe Festival performance of Leah P and Gravy. I rather suspect that it will be less than a year before my next trip to Australia's top end; it seems that I have found some very good people there.
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2023-07-22 09:38 am
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Darwin Adventures, The Second Attempt

This time last year I visited my dear friend Lara D in Darwin. It was a cunning plan; I would help her move into her new apartment that overlooks the bay and National Park, we would work during the day and attend Fringe Festivals in the evening, and take a weekend trip inland. But circumstances were against us; upon landing Lara's luggage went missing. A few hours later I was receiving early morning SMSs that my cat in Melbourne was getting sick; she would be a dead cat by that afternoon. Then we managed to get to but one Fringe event, before I came down for - the one and only time - that the dreaded COVID-19 hit me. It was thankfully a very mild case (vaccines work, people), but isolation was required. Although I didn't require any time off work, I didn't go anywhere except the balcony and spent the evenings in good company being plied with good cocktails and good conversation.

Well, the earth has completed another orbit and so I'm here for a second attempt at adventure. In a sense it started a few nights ago while attending an axe-throwing social event sponsored by the HPC computer, Xenon systems, which was a great opportunity to catch up with some people whom I've worked with in the past including Suda R., Dragan D., and Gary M. With the arrival at Darwin, I've been in the lovely company of Lara and her new housemate Mia (and the adorable rabbit, Cocoa), and we've managed to go to two Festival evenings; the first to see "A Brief History of Drunking" (some good content, but the execution needs work), and last night to Leah Potter's "I Went To Therapy". Leah, whom I've known on FB for quite a while, delivered an excellent show with challenging autobiographical content and received some superb Spanish guitar support from Gravy. We have another event tonight and then we're off to Litchfield National Park for week-end adventures. But, as always, it is neither the journey nor the destination that is most important, but the company.